Associate Director, Medicinal Chemistry, Targeted Protein Degradation
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Position Summary We are seeking an experienced medicinal chemist to lead our Targeted Protein Degradation (TPD) chemistry strategy. This individual will bring prior leadership experience advancing TPD programs and will b…
Skills: Medicinal Chemistry, Targeted Protein Degradation, SAR Analysis, Linker Design, Bifunctional Molecule Optimization
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Associate Director, Medicinal Chemistry, Targeted Protein Degradation
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$155k–$223k/yr
Full-time
postgraduate degree
Medical Insurance, Dental Insurance, Vision Insurance, Prescription Drug Coverage, Basic Life Insurance, Accidental Death & Dismemberment Insurance
Posted 24d ago
~40 hrs/week
Responsibilities
Lead the Targeted Protein Degradation (TPD) chemistry strategy, shaping the platform and guiding multiple programs toward development candidate selection. This role involves defining design principles, managing linker strategies, and expanding capabilities into next-generation degradation modalities.
Requirements
Requires a Ph.D. in Chemistry or a related field with over 8 years of industry experience in medicinal chemistry. Candidates must have a proven track record of leading TPD programs with heterobifunctional molecules to the development candidate stage.
Full job description
Position Summary
We are seeking an experienced medicinal chemist to lead our Targeted Protein Degradation (TPD) chemistry strategy. This individual will bring prior leadership experience advancing TPD programs and will be responsible for shaping and executing the company’s degradation platform.
This role combines scientific leadership and strategic direction with the opportunity to both guide multiple programs and directly lead a TPD project. Importantly, this individual will play a foundational role in expanding the company’s capabilities into next-generation degradation modalities (e.g. extracellular proteins), helping define platform direction from the ground up.
Key Responsibilities:
Scientific & Strategic Leadership:
Define and implement the company’s TPD chemistry strategy, including degrader design principles, toolbox development, and platform evolution.
Work with chemistry leads and project teams to lead TPD chemistry efforts on assigned programs, contributing to platform strategy and advancing molecules toward development candidate selection..
Establish linker and building block strategies, including guiding sourcing and synthesis of E3 ligase ligands and linkers.
Partner with ADME/DMPK teams to shape property and developability strategies specific to TPD molecules.
Help define and initiate new heterobifunctional modalities beyond CRBN/VHLbased degraders, including ongoing efforts in extracellular protein degradation.
Team Leadership & Cross-Functional Collaboration:
Mentor and oversee a scientist responsible for establishing a parallel synthesis capability to accelerate lead discovery.
Collaborate closely with medicinal chemistry, computational chemistry and ADME leads across programs.
Serve as the internal TPD expert, influencing multi-project direction and decision-making.
Execution & Innovation:
Drive rapid iteration cycles through efficient synthetic design and prioritization.
Incorporate emerging advances in TPD modalities, linker chemistry, and E3 biology.
Play a key role in building the next-generation degradation platform, including evaluating and implementing novel modalities (e.g., extracellular protein degradation, molecular glues, and beyond).
Help build scalable workflows and infrastructure to support platform productivity.
Qualifications:
Required:
Ph.D. in Chemistry or related field with extensive industry experience in medicinal chemistry with 8+ years of industry
Demonstrated success leading one or more targeted protein degradation programs with heterobifunctional molecules through to a development candidate.
Deep understanding of SAR, linker design, and bifunctional molecule optimization.
Strong knowledge of E3 ligase biology and degrader mechanisms
Experience working cross-functionally with ADME/DMPK, biology, and computational chemistry.
Leadership Profile:
Track record of scientific leadership and program ownership.
Ability to operate at both strategic and hands-on levels.
Strong collaborator capable of influencing across disciplines.
Experience mentoring scientists and building capabilities.
Preferred:
Experience establishing or scaling a TPD or proximity-based pharmacology platform.
Familiarity with emerging heterobifunctional modalities.
Familiarity with parallel synthesis and direct-to-biology chemistry workflows.
Minimum $154,800.00 - Maximum $222,525.00, plus incentive opportunity: The range shown represents a typical pay range or starting pay for individuals who are hired in the role to perform in the United States. Other elements may be used to determine actual pay such as the candidate’s job experience, specific skills, and comparison to internal incumbents currently in role. Typically, actual pay will be positioned within the established range, rather than at its minimum or maximum. This information is provided to applicants in accordance with states and local laws.
Application Deadline: This will be posted for a minimum of 5 business days.
Company benefits: Comprehensive medical, dental, vision, prescription drug coverage, company provided basic life, accidental death & dismemberment, short-term and long-term disability insurance, tuition reimbursement, student loan assistance, a generous 401(k) match, flexible time off, paid holidays, and paid leave programs as well as other company provided benefits.
This job description is intended to describe the general nature and level of the work being performed by the people assigned to this position. It is not intended to include every job duty and responsibility specific to the position. Jnana Therapeutics reserves the right to amend and change responsibilities to meet business and organizational needs as necessary.
Jnana Therapeutics is an equal opportunity employer. All qualified applicants are encouraged to apply and will be given consideration for employment without regard to race, color, sex, gender identity or gender expression, sexual orientation, age, disability, religion, national origin, veteran status, marital status, or any other legally protected characteristic.
If you are a qualified individual with a disability or a disabled veteran, you may request a reasonable accommodation, if you are unable or limited in your ability to apply to this job opening as a result of your disability. You can request reasonable accommodations by contacting Accommodation Request.
Statement Regarding Job Recruiting Fraud Scams
At Jnana Therapeutics we take security and protection of your personal information very seriously. Please be aware individuals may approach you and falsely present themselves as our employees or representatives. They may use this false pretense to try to gain access to your personal information or acquire money from you by offering fictitious employment opportunities purportedly on our behalf.
Please understand, Jnana Therapeutics will never ask for financial information of any kind or for payment of money during the job application process. We do not require any financial, credit card or bank account information and/or any payment of any kind to be considered for employment. We will also not offer you money to buy equipment, software, or for any other purpose during the job application process. If you are being asked to pay or offered money for equipment fees or some other application processing fee, even if claimed you will be reimbursed, this is not Jnana Therapeutics. These claims are fraudulent, and you are strongly advised to exercise caution when you receive such an offer of employment.
Jnana Therapeutics will also never ask you to download a third-party application in order to communicate about a legitimate job opportunity. Scammers may also send offers or claims from a fake email address or from Yahoo, Gmail, Hotmail, etc, and not from an official Jnana Therapeutics email address. Please take extra caution while examining such an email address, as the scammers may misspell an official Jnana Therapeutics email address and use a slightly modified version duplicating letters.
To ensure that you are communicating about a legitimate job opportunity at Jnana Therapeutics, please only deal directly with Jnana Therapeutics through its official Jnana Therapeutics Career website https://www.jnanatx.com/join-us/.
Jnana Therapeutics will not be held liable or responsible for any claims, losses, damages or expenses resulting from job recruiting scams. If you suspect a position is fraudulent, please contact Jnana Therapeutics call center at: 800-363-5670. If you believe you are the victim of fraud resulting from a job recruiting scam, please contact the FBI through the Internet Crime Complaint Center at: https://www.ic3.gov, or your local authorities.
Jnana Therapeutics, Inc. does not accept unsolicited assistance from search firms for employment opportunities. All CVs/resumes submitted by search firms to any Jnana employee directly or through Jnana’s application portal without a valid written search agreement in place for the position will be considered Jnana’s sole property. No fee will be paid if a candidate is hired by Jnana as a result of an agency referral where no pre-existing agreement is in place. Where agency agreements are in place, introductions are position specific. Please, no phone calls or emails.
Related keywords
Targeted Protein DegradationTPDMedicinal ChemistryHeterobifunctional MoleculesE3 LigaseCRBNVHLMolecular GluesExtracellular Protein DegradationSARADMEDMPKParallel SynthesisChemoproteomicsDrug DiscoverySmall Molecule
Creating new products for better health worldwide.
Industry
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Company size
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Headquarters
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LinkedIn followers
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There are two Otsuka pharmaceutical industry companies in the U.S.:
Otsuka America Pharmaceutical, Inc. (OAPI) successfully commercializes Otsuka-discovered and in-licensed products in North America.
Otsuka Pharmaceutical Development & Commercialization, Inc. (OPDC) clinically develops and registers innovative healthcare products on a global basis.
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